Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs60395380 | chr16:20781852 | TA/T | 4.2E-10 | 489 | 15.97 | 14.9 | 14.3 | KM Plot |
| THCA | rs6043752 | chr20:16101243 | C/T | 0.000198 | 490 | 12.63 | 14.55 | 15.97 | KM Plot |
| THCA | rs60489122 | chr15:41264971 | GATA/G | 0.000136 | 475 | 15.17 | 16.4 | 17.93 | KM Plot |
| THCA | rs60576870 | chr3:14575764 | C/T | 6.67E-7 | 473 | 16.4 | 14.97 | 14.52 | KM Plot |
| THCA | rs60611260 | chr6:24468789 | A/T | 0 | 483 | 16.57 | 14.78 | 8.88 | KM Plot |
| THCA | rs6062373 | chr20:61480444 | G/C | 4.4E-5 | 483 | 15.07 | 17.47 | 14.55 | KM Plot |
| THCA | rs60625971 | chr8:144563528 | C/T | 3.79E-9 | 474 | 16.65 | 14.77 | 12.67 | KM Plot |
| THCA | rs6062707 | chr20:61478846 | G/A | 4.38E-5 | 483 | 15.07 | 17.47 | 14.55 | KM Plot |
| THCA | rs6062708 | chr20:61479496 | C/G | 4.41E-5 | 482 | 15.07 | 17.23 | 14.55 | KM Plot |
| THCA | rs6062716 | chr20:61486950 | C/T | 5.02E-5 | 481 | 15 | 17.23 | 14.55 | KM Plot |
| THCA | rs6062718 | chr20:61493620 | C/T | 5.02E-5 | 479 | 15.13 | 17.23 | 14.55 | KM Plot |
| THCA | rs60649827 | chr8:144624917 | G/A | 5.05E-7 | 488 | 16.3 | 15.83 | 7 | KM Plot |
| THCA | rs6089808 | chr20:61494917 | A/C | 5.18E-5 | 471 | 15.15 | 17.6 | 14.55 | KM Plot |
| THCA | rs6090147 | chr20:61494915 | C/A | 5.18E-5 | 471 | 15.15 | 17.6 | 14.55 | KM Plot |
| THCA | rs60920812 | chr6:167579128 | A/G | 0.000213 | 489 | 16.23 | 14.9 | 12.72 | KM Plot |